PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca21650.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 206aa    MW: 24035.8 Da    PI: 9.2568
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca21650.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.93.5e-3561251115
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                 l pGfrF Pt+eel+++yL  k++ +   e+++ i+++diy++eP++Lp+    ++k+++++w+fF+ +++++a+g r+nr+t++gyWkatg+   v+s
  Dca21650.1   6 LLPGFRFYPTEEELIDFYLLTKLRCHYnPEIDRLIPSIDIYNFEPSQLPEqageRCKGDSEQWFFFVGQQEREARGGRPNRTTATGYWKATGSLSYVYS 104
                 579********************99983455556**************9546666667888************************************** PP

         NAM  95 kkgelvglkktLvfykgrapk 115
                 +k++++g+kkt+vfykg +++
  Dca21650.1 105 SKTKVIGVKKTMVFYKGVEER 125
                 ***************997665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-354126IPR003441NAC domain
PROSITE profilePS5100534.0546170IPR003441NAC domain
PfamPF023651.3E-178125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MDSKELLPGF RFYPTEEELI DFYLLTKLRC HYNPEIDRLI PSIDIYNFEP SQLPEQAGER  60
CKGDSEQWFF FVGQQEREAR GGRPNRTTAT GYWKATGSLS YVYSSKTKVI GVKKTMVFYK  120
GVEERDEFMQ SIRNLRMCSS IRSTTTTTTT TTTTTTTTTD DNHITKSQRK YMGGRSRKWL  180
KRYNNNNDNN DNNNNNVNVR GEKYCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-23612515127Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002274253.11e-55PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR32e-49NAC90_ARATH; NAC domain-containing protein 90
TrEMBLF6HHE22e-55F6HHE2_VITVI; Putative uncharacterized protein
STRINGVIT_06s0080g00780.t015e-55(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.17e-50NAC domain containing protein 90